| Archaeoglobea (Class) Cavalier-Smith 2002 nom. rej. | Page: tbl. 1 (p. 14). |
| Arthrobacteria (Class) Cavalier-Smith 2002 nom. rej. | Page: tbl. 1 (p. 13). |
| Chlamydiae (Class) Cavalier-Smith 2002 nom. rej. | Page: tbl. 1 (p. 11). |
| Chlorobacteria (Class) Cavalier-Smith 2002 nom. illeg., nom. rej. | Page: tbl. 1 (p. 10: "(Cavalier-Smith, 1992a) classis nov."). |
| Chlorobea (Class) Cavalier-Smith 2002 nom. rej. | Page: tbl. 1 (p. 11). |
| Chromatibacteria (Class) Cavalier-Smith 2002 nom. rej. | Page: tbl. 1 (p. 11). |
| Chroobacteria (Class) Cavalier-Smith 2002 nom. rej. | Page: tbl. 1 (p. 10: "classis nov."). |
| Chroococcales (Order) Cavalier-Smith 2002 nom. illeg., nom. rej. | Page: tbl. 1 (p. 10: "ord. nov"). |
| Crenarchaeota (Subdivision) Cavalier-Smith 2002 | Page: tbl. 1 (p. 14). |
| Crenarchaeota (Class) Cavalier-Smith 2002 nom. rej. | |
| Cyanobacteria (Phylum) (ex Stanier 1974) Cavalier-Smith 2002 stat. inval. | Page: tbl. 1 (p. 10: "Division ... (Stanier 1974) nom. rev. (ex Stanier & Cohen-Bazire, 1977 as class)"; "phyla (=divisions)"). |
| Cyanobacteria (Division) (ex Stanier 1974) Cavalier-Smith 2002 stat. inval. | Page: tbl. 1 (p. 10: "Division ... (Stanier 1974) nom. rev. (ex Stanier & Cohen-Bazire, 1977 as class)"; "phyla (=divisions)"). |
| Deltabacteria (Class) Cavalier-Smith 2002 nom. rej. | Page: tbl. 1 (p. 12). |
| Eobacteria (Division) Cavalier-Smith 2002 stat. inval. | Page: tbl. 1 (p. 10: "(Cavalier-Smith, 1992a) divisio nov."; "phyla (=divisions)"). |
| Epsilobacteria (Class) Cavalier-Smith 2002 nom. illeg., nom. rej. | Page: tbl. 1 (p. 12). |
| Euryarchaeota (Subdivision) Cavalier-Smith 2002 | Page: tbl. 1 (p. 14). |
| Eurythermea (Superclass) Cavalier-Smith 2002 | Page: tbl. 1 (p. 14). |
| Ferrobacteria (Class) Cavalier-Smith 2002 nom. rej. | Page: tbl. 1 (p. 12). |
| Flavobacteria (Class) Cavalier-Smith 2002 nom. rej. | Page: tbl. 1 (p. 11). |
| Geovibriales (Order) Cavalier-Smith 2002 nom. rej. | Page: tbl. 1 (p. 12). |
| Gloeobacterales (Order) Cavalier-Smith 2002 nom. inval., nom. rej. | Page: tbl. 1 (p. 10: "ord. nov."). |
| Gloeobacteria (Class) Cavalier-Smith 2002 nom. rej. | Page: tbl. 1 (p. 10: "(Cavalier-Smith, 1998) classis nov."). |
| Hadobacteria (Class) Cavalier-Smith 2002 nom. illeg., nom. rej. | Page: tbl. 1 (p. 10: "(Cavalier-Smith, 1992a; emend. 1998) classis nov."). |
| Halomebacteria (Class) Cavalier-Smith 2002 nom. rej. | Page: tbl. 1 (p. 14). |
| Hormogoneae (Class) Cavalier-Smith 2002 nom. illeg., nom. rej. | Page: tbl. 1 (p. 11: "(ex Thuret 1875) classis nov."). |
| Methanothermea (Class) Cavalier-Smith 2002 nom. rej. | Page: tbl. 1 (p. 14). |
| Mycobacteriales (Order) Cavalier-Smith 2002 nom. illeg. | Page: tbl. 1 (p. 13). |
| Nostocales (Order) Cavalier-Smith 2002 nom. illeg., nom. rej. | Page: tbl. 1 (p. 11: "ord. nov."). |
| Oscillatoriales (Order) Cavalier-Smith 2002 nom. illeg., nom. rej. | Page: tbl. 1 (p. 11: "ord. nov."). |
| Picrophilales (Order) Cavalier-Smith 2002 nom. rej. | Page: tbl. 1 (p. 14). |
| Picrophilea (Class) Cavalier-Smith 2002 nom. rej. | Page: tbl. 1 (p. 14). |
| Planctomycea (Class) Cavalier-Smith 2002 nom. rej. | Page: tbl. 1 (p. 11). |
| Pleurocapsales (Order) Cavalier-Smith 2002 nom. illeg., nom. rej. | Page: tbl. 1 (p. 11: "ord. nov."). |
| Proteobacteria (Division) Cavalier-Smith 2002 stat. inval. | Page: tbl. 1 (p. 11). |
| Protoarchaea (Class) Cavalier-Smith 2002 nom. rej. | Page: tbl. 1 (p. 14). |
| Spirochaetes (Class) Cavalier-Smith 2002 nom. rej. | Page: tbl. 1 (p. 11). |
| Stigonematales (Order) (ex Geitler 1925) Cavalier-Smith 2002 nom. illeg., nom. rej. | Page: tbl. 1 (p. 11: "ord. nov."). |
| Streptomycetes (Class) Cavalier-Smith 2002 nom. rej. | Page: tbl. 1 (p. 13). |
| Teichobacteria (Class) Cavalier-Smith 2002 nom. rej. | Page: tbl. 1 (p. 13). |
| Togobacteria (Class) Cavalier-Smith 2002 nom. rej. | Page: tbl. 1 (p. 13). |