Kingdom Chromalveolata Adl et al., 2005
see Kingdom Chromista Caval.-Sm. (1981)
Infrakingdom Alveolata Cavalier-Smith, 1991
see [unranked] Alveolata Cavalier-Smith, 1991
Phylum Myzozoa Cavalier-Smith & Chao, 2004
see Subphylum Myzozoa Cavalier-Smith & Chao, 2004
Superclass Dinokaryota Fensome et al., 1993
Class Dinoflagellata Bütschli, 1885
see Superclass Dinoflagellata Bütschli, 1885
01 Order Haplozooidea Poche, 1913
see Order Haplozoonales Poche (1913)
02 Order Dinotrichales Pascher (1914)
03 Order Dinococcales Pascher (1914)
04.59 Genus Akashiwo Gert Hansen & Moestrup (2000) [within unnamed taxon]
05 Order Brachidiniales A.R. Loebl. ex Sournia (1984) [monotypic]
06 Order Gymnodiniales Apstein (1909)
07 Order Ptychodiscales Fensome, F.J.R. Taylor, G. Norris, Sarjeant, Wharton & G.L. Williams (1993) [monotypic]
08 Order Thoracosphaerales Tangen (1982)
see Order Peridiniales Haeckel (1894)
09 Order Peridiniales Haeckel (1894)
10.1 Family Tovelliaceae Moestrup, K.C.R. Lindb. & Daugbjerg (2005), incertae sedis
10.2 Family Woloszynskiaceae Bourr. ex Starmach (1974), incertae sedis [monotypic]
11 Family Apodiniaceae Chatton (1920), incertae sedis
12 Order Actiniscales Sournia (1984) [monotypic]
13 Order Amphilothales Er. Lindem. (1928) [monotypic]
14 Order Prorocentrales Lemmerm. (1910)
15 Order Dinophysales Er. Lindem. (1928)
16 Order Blastodiniales Chatton (1906) [monotypic]
17 Order Gonyaulacales F.J.R. Taylor (1980)
18.255 Genus Berghiella Kof. & J.R. Michener (1911), incertae sedis
19.256 Genus Ceratoperidinium Margalef ex A.R. Loebl. (1980), incertae sedis [monotypic]
20.257 Genus Pyramidodinium T. Horig. & C. Sukigara (2005), incertae sedis
21.258 Genus Pseudoactiniscus Bursa (1969), incertae sedis
22.259 Genus Thaumatodinium Böhm (1933), incertae sedis