Kingdom Protoctista Hogg, 1860
Phylum Microspora Sprague, 1977 - microsporans
see Phylum Microsporida Balbiani, 1882
Class Microsporea Levine & Corliss, 1963
see Class Microsporidea Corliss & Levine, 1963
Order Microsporida Balbiani, 1882
Suborder Apansporoblastina Tuzet et al., 1971
Family Unikaryonidae Sprague, 1977
1 Genus Unikaryon Canning, Lai & Lie, 1974
1.1 Genus Oligosporidium Codreanu-Bălcescu, Codreanu & Traciuc, 1981
2 Genus Encephalitozoon Levaditi, Nicolau & Schoen, 1923
3 Genus Nosemoides Vinckier, 1975
3.1 Genus Pleistosporidium Codreanu-Bălcescu & Codreanu, 1982
4 Genus Tetramicra Matthews & Matthews, 1980
5 Genus Orthosoma Canning, Wigley & Barker, 1983, nom. illeg.
see Genus Orthosomella Canning, Wigley & Barker, 1991
6 Genus Enterocytozoon Desportes, Le Charpentier, Galian, Bernard, Cochand-Priollet, Lavergne, Ravisse & Modigliani, 1985
7 Genus Microgemma Ralphs & Matthews, 1986