Phylum Ascomycota Caval.-Sm. (1998) - sac fungi
Subphylum Pezizomycotina O.E. Erikss. & Winka (1997)
Class Dothideomycetes O.E. Erikss. & Winka (1997)
Subclass Dothideomycetidae P.M.Kirk, P.F. Cannon, J.C. David & Stalpers ex C.L. Schoch, Spatafora, Crous & Shoemaker (2007)
Order Capnodiales Woron. (1925)
Family Mycosphaerellaceae Lindau (1897), nom. cons.
Genus Acervuloseptoria Crous & Jol. Roux (2014)
Genus Achorodothis Syd. (1926)
Genus Amycosphaerella Quaedvl. & Crous (2014)
Genus Anguillosporella U.Braun (1995)
Genus Annellophora S.Hughes (1952)
Genus Annellophragmia Subram. (1963)
Genus Annellosympodia McTaggart, R.G. Shivas & U.Braun (2007)
Genus Annellosympodiella Crous & Assefa (2014)
Genus Apseudocercosporella Videira & Crous (2016)
Genus Asperisporium Maubl. (1913)
Genus Asteromidium Speg. (1888)
Genus Australosphaerella Videira & Crous (2017)
Genus Brunneosphaerella Crous (2009)
Genus Brunswicksiella Wijayaw., K.D.Hyde, Lumbsch, Jian K. Liu, Maharachch., Ekanayaka, Qing Tian & Phookamsak (2018), orth. inval.
see Genus Brunswickiella Videira & Crous (2017)
Genus Bryopelta Döbbeler & Poelt (1978)
Genus Camptomeriphila Crous & M.J. Wingf. (2016)
Genus Camptomeris Syd. (1927)
Genus Caryophylloseptoria Verkley, Quaedvl. & Crous (2013)
Genus Catenulocercospora C. Nakash., Videira & Crous (2017)
Genus Ceratosperma Speg. (1918)
Genus Cercoramularia Videira, H.D. Shin, C. Nakash. & Crous (2017)
Genus Cercosperma G. Arnaud ex B.Sutton & Hodges (1983)
Genus Cercosphaerella Kleb. (1918)
Genus Cercospora Fresen. (1863), nom. cons. prop.
Genus Cercosporella Sacc. (1880)
Genus Cercosporidium Earle (1901)
Genus Chuppomyces Videira & Crous (2017)
Genus Cladosporiella Deighton (1965)
Genus Clarohilum Videira & Crous (2017)
Genus Clypeispora A.W.Ramaley (1991)
Genus Clypeosphaerella Guatim., R.W. Barreto & Crous (2016)
Genus Collarispora Videira & Crous (2017)
Genus Colletogloeum Petr. (1953)
Genus Coremiopassalora U.Braun, C. Nakash., Videira & Crous (2017)
Genus Cytostagonospora Bubák (1916)
Genus Deightonomyces Videira & Crous (2017)
Genus Devonomyces Videira & Crous (2017)
Genus Dictyosporina V.P. Abreu, R.F.Castañeda & O.L. Pereira (2017)
Genus Distocercospora N. Pons & B.Sutton (1988)
Genus Distocercosporaster Videira, H.D. Shin, C. Nakash. & Crous (2017)
Genus Distomycovellosiella U.Braun, C. Nakash., Videira & Crous (2017)
Genus Dothistroma Hulbary (1941)
Genus Epicoleosporium Videira & Crous (2016)
Genus Episphaerella Petr. (1924)
Genus Euryachora Fuckel (1870)
Genus Exosporium Link (1809), nom. sanct.
Genus Exutisphaerella Videira & Crous (2017)
Genus Filiella Videira & Crous (2016)
Genus Fulvia Cif. (1954)
Genus Fusoidiella Videira & Crous (2016)
Genus Gillotia Sacc. & Trotter (1913)
Genus Graminopassalora U.Braun, C. Nakash., Videira & Crous (2017)
Genus Hyalocercosporidium Videira & Crous (2017)
Genus Hyalozasmidium U.Braun, C. Nakash., Videira & Crous (2017)
Genus Lecanosticta Syd. (1922)
Genus Lembosiopsis Theiss. (1918)
Genus Lophiosphaerella Hara (1948)
Genus Madagascaromyces U.Braun, C. Nakash., Videira & Crous (2017)
Genus Melanodothis R.H. Arnold (1972)
Genus Microcyclosporella J. Frank, Schroers & Crous (2010)
Genus Micronematomyces U.Braun, C. Nakash., Videira & Crous (2017)
Genus Miuraea Hara (1948)
Genus Mycodiella Crous (2016)
Genus Mycoporis Clem. (1909)
Genus Mycosphaerelloides Videira & Crous (2016)
Genus Mycovellosiella Rangel (1917)
Genus Neoceratosperma Crous & Cheew. (2014)
Genus Neocercospora M. Bakhshi, Arzanlou, Babai-ahari & Crous (2015)
Genus Neocercosporidium Videira & Crous (2017)
Genus Neodeightoniella Crous & W.J. Swart (2013)
Genus Neomycosphaerella Crous (2013)
Genus Neopenidiella Quaedvl. & Crous (2014)
Genus Neophloeospora U.Braun, C. Nakash., Videira & Crous (2017)
Genus Neopseudocercospora Crous (2013)
Genus Neopseudocercosporella Videira & Crous (2016)
Genus Neoramichloridium Phookamsak, Thambug. & K.D.Hyde (2017)
Genus Neoseptoria Quaedvl., Verkley & Crous (2013)
Genus Nothopassalora U.Braun, C. Nakash., Videira & Crous (2017)
Genus Nothopericoniella Videira & Crous (2017)
Genus Nothophaeocryptopus Videira, C. Nakash. & Crous (2017)
Genus Pachyramichloridium Videira & Crous (2017)
Genus Pallidocercospora Crous (2012)
Genus Pantospora Cif. (1938)
Genus Paracercospora Deighton (1979)
Genus Paracercosporidium Videira & Crous (2017)
Genus Paramycosphaerella Crous & Jol. Roux (2013)
Genus Paramycovellosiella Videira, H.D. Shin & Crous (2017)
Genus Parapallidocercospora Videira, Crous, U.Braun & C. Nakash. (2017)
Genus Passalora Fr. (1849)
Genus Phaeocercospora Crous (2012)
Genus Phaeophleospora Rangel (1916)
Genus Phloeospora Wallr. (1833)
Genus Placocrea Syd. (1939)
Genus Pleopassalora Videira & Crous (2017)
Genus Pluripassalora Videira & Crous (2017)
Genus Polyphialoseptoria Quaedvl., R.W. Barreto, Verkley & Crous (2013)
Genus Polysporella Woron. (1916)
Genus Polythrincium Kunze (1817), nom. sanct.
Genus Pseudocercospora Speg. (1910), nom. cons.
Genus Pseudocercosporella Deighton (1973)
Genus Pseudocercosporidium Deighton (1973)
Genus Pseudopericoniella Videira & Crous (2017)
Genus Pseudophaeophleospora C. Nakash., Videira & Crous (2017)
Genus Pseudostigmidium Etayo (2008)
Genus Pseudozasmidium Videira & Crous (2017)
Genus Ragnhildiana Solheim (1931)
Genus Ramularia Unger (1833), nom. cons.
Genus Ramulispora Miura (1920)
Genus Rhachisphaerella U.Braun, C. Nakash., Videira & Crous (2017)
Genus Rosisphaerella Videira & Crous (2017)
Genus Ruptoseptoria Quaedvl., Verkley & Crous (2013)
Genus Scolecostigmina U.Braun (1999)
Genus Septoria Sacc. (1884), nom. cons.
Genus Sirosporium Bubák & Serebrian. (1912)
Genus Sonderhenia H.J. Swart & J. Walker (1988)
Genus Sphaerellothecium Zopf (1897)
Genus Sphaerulina Sacc. (1878)
Genus Stigmidium Trevis. (1860)
Genus Stromatoseptoria Quaedvl., Verkley & Crous (2013)
Genus Sultanimyces Videira & Crous (2017)
Genus Trochophora R.T.Moore (1955)
Genus Uwemyces Hern.-Restr., Sarria & Crous (2016)
Genus Virosphaerella Videira & Crous (2017)
Genus Xenomycosphaerella Quaedvl. & Crous (2014)
Genus Xenoramularia Videira, H.D. Shin & Crous (2016)
Genus Xenosonderhenia Crous (2012)
Genus Xenosonderhenioides Videira & Crous (2017)
Genus Zasmidium Fr. (1849), nom. dub.
Genus Zymoseptoria Quaedvl. & Crous (2011)