Clade †Pterosauria Owen 1842 [Andres & Padian 2020]
see Order Pterosauria Kaup, 1834
Clade †Macronychoptera Unwin 2003 [Andres 2021]
Clade †Novialoidea Kellner 2003 [Andres 2021]
Clade †Breviquartossa Unwin 2003 [Andres 2021]
Clade †Pterodactylomorpha Andres, Clark & Xu 2014 [Andres 2021]
see Suborder Pterodactylomorpha Schaller, 2007
Clade †Monofenestrata Lü, Unwin, Jin, Liu & Ji 2010 [Andres 2021]
Clade †Pterodactyliformes Andres, Clark & Xu 2014 [Andres 2021]
Clade †Caelicodracones Andres, Clark & Xu 2014 [Andres 2021]
see Clade Caelidracones Unwin 2003
Clade †Pterodactyloidea Plieninger 1901 [Andres & Padian 2020]
see Infraorder Pterodactyloidea Plieninger, 1901
Clade †Lophocratia Unwin 2003 [Andres 2021]
Clade †Eupterodactyloidea Bennett 1994 [Andres 2021]
Clade †Ornithocheiroidea Seeley 1876 [Andres 2021] nom. cl. inval.
see Clade Ornithocheiroidea Seeley 1878 [Thomas & McDavid 2025]
Clade †Azhdarchoidea Unwin 1995 [Andres 2021] nom. cl. inval.
see Clade Azhdarchoidea Unwin 1995 [Thomas & McDavid 2025]
Clade †Tapejaridae Kellner 1989 [Andres 2021]
see Family Tapejaridae Kellner, 1989
Clade †Tapejarinae Kellner & Campos 2007 [Andres 2021]
see Subfamily Tapejarinae Kellner, 1989
Clade †Tapejarini Andres, Clark & Xu 2014 [Andres 2021]
see Tribe Tapejarini Kellner, 1989
1.1 Genus †Tapejara Kellner, 1989
1.2 Genus †Europejara Vullo, Marugan-Lobón, Kellner, Buscalioni, Gomez, de la Fuente & Moratalla, 2012
1.3 Genus †Vectidraco Naish, Simpson & Dyke, 2013
2.1 Genus †Caiuajara Manzig, Kellner, Weinschütz, Fragoso, Vega, Guimarães, Godoy, Liccardo, Ricetti & de Moura, 2014
2.2 Genus †Tupandactylus Kellner & De Almeida Campos, 2007