Protozoa Goldfuss, 1818 - protozoans
  
 Phylum Ascetospora Sprague, 1979 - ascetosporans
 see Class Ascetosporea T. Cavalier-Smith, 2002
  
 01 †Acritarcha Evitt, 1963 - acritarchs
  
 02 †Chitinozoa Eisenack, 1931 - chitinozoans
  
 03 Phylum Sarcomastigophora Honigberg & Balamuth, 1963
  
 04 Phylum Labyrinthomorpha - labyrinthomorphans
 see [unranked] labyrinthulids
  
 05 Phylum Apicomplexa Levine, 1970
 see Infraphylum Apicomplexa Levine, 1970
  
 06 Phylum Microspora Sprague, 1977 - microsporans
 see Phylum Microsporida Balbiani, 1882
  
 08 Phylum Myxozoa Grassé, 1970, incertae sedis - myxozoans
 see Subphylum Myxozoa Grassé, 1970
  
 10 Phylum Hemimastigophora Foissner, Blatterer & Foissner, 1988